MeRN Documentation

Learn MeRN’s core functionality with the supplied data and pretrained models, or prepare your own data for training and downstream analysis.

Tutorials

• MeRN tutorial
  • Running it
  • What this folder contains
  • About the subsampled data
• MeRN Quick Start Tutorial
  • Metabolic Representation Net (MeRN)
  • Metabolic and Background Embeddings
  • Reaction Activity, KEGG Pathway, and DDP Calculations
  • Metabolic Activity Summaries Across Clusters
  • Visualizing Metabolic Programs on KEGG Pathway Graphs
  • Comparing Metabolic Coordination in a Folr1 Knockout